Transcript: lnc-GOT2-1:1

Basic information

LNCipedia transcript ID: lnc-GOT2-1:1 
LNCipedia gene ID: lnc-GOT2-1
Ensembl Gene ID: ENSG00000261638
Ensembl Transcript ID: ENST00000569328
Location (hg38): chr16:58847808-58880213
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 445 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000569328.1; RP11-700H13.1-001; OTTHUMT00000422089.1; NONHSAT142883
Alternative gene names: ENSG00000261638.1; RP11-700H13.1; OTTHUMG00000173081.1; AC092378.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -186.7957 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GOT2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GOT2-1:1
4.0 lnc-GOT2-1:1
4.1 lnc-GOT2-1:1
5.0 lnc-GOT2-1:1
5.1 lnc-CFAP20-30:1
5.2 lnc-GOT2-1:1