Transcript: lnc-GOT2-1:2

Basic information

LNCipedia transcript ID: lnc-GOT2-1:2 
LNCipedia gene ID: lnc-GOT2-1
Ensembl Gene ID: ENSG00000261638
Ensembl Transcript ID: ENST00000562304
Location (hg38): chr16:58847807-58880036
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 505 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000562304.1; RP11-700H13.1-002; OTTHUMT00000422088.1; NONHSAT142882
Alternative gene names: ENSG00000261638.1; RP11-700H13.1; OTTHUMG00000173081.1; AC092378.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -214.1489 non-coding 
CPAT coding probability 2.60% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GOT2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GOT2-1:2
4.0 lnc-GOT2-1:2
4.1 lnc-GOT2-1:2
5.0 lnc-GOT2-1:2
5.1 lnc-CFAP20-30:2
5.2 lnc-GOT2-1:2