Transcript: lnc-GPALPP1-2:1

Basic information

LNCipedia transcript ID: lnc-GPALPP1-2:1 
LNCipedia gene ID: lnc-GPALPP1-2
Location (hg38): chr13:45046590-45083125
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 240 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: TCONS_00021545; ENST00000437748; ENST00000437748.1; RP11-321C24.1-001; OTTHUMT00000044756.1; NONHSAT033541
Alternative gene names: XLOC_010373; linc-GTF2F2-1; ENSG00000223732; RP11-321C24.1; ENSG00000223732.1; OTTHUMG00000016843.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -131.807 non-coding 
CPAT coding probability 2.16% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPALPP1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KIAA1704-2:1
3.1 lnc-KIAA1704-2:1
4.0 lnc-KIAA1704-2:1
4.1 lnc-KIAA1704-2:1
5.0 lnc-KIAA1704-2:1
5.1 lnc-KL-123:1
5.2 lnc-GPALPP1-2:1