Transcript: lnc-GPAT2-1:2

Basic information

LNCipedia transcript ID: lnc-GPAT2-1:2 
LNCipedia gene ID: lnc-GPAT2-1
Location (hg38): chr2:95948528-95956870
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 313 bp
Exons: 5
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00005201; NONHSAT072523
Alternative gene names: XLOC_002209; linc-TRIM43B-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -133.855 non-coding 
CPAT coding probability 36.71% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPAT2-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPAT2-1:2
3.1 lnc-GPAT2-1:2
4.0 lnc-GPAT2-1:2
4.1 lnc-GPAT2-1:2
5.0 lnc-GPAT2-1:2
5.1 lnc-ZNF514-38:2
5.2 lnc-GPAT2-1:2