Transcript: lnc-GPATCH4-1:5

Basic information

LNCipedia transcript ID: lnc-GPATCH4-1:5 
LNCipedia gene ID: lnc-GPATCH4-1
Location (hg38): chr1:156598967-156601479
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 513 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT006898
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -77.5743 non-coding 
CPAT coding probability 9.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPATCH4-1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-IQGAP3-1:2
4.0 lnc-GPATCH4-1:5
4.1 lnc-GPATCH4-1:5
5.0 lnc-GPATCH4-1:5
5.1 lnc-PAQR6-14:3
5.2 lnc-GPATCH4-1:5