Transcript: lnc-GPATCH4-3:3

Basic information

LNCipedia transcript ID: lnc-GPATCH4-3:3 
LNCipedia gene ID: lnc-GPATCH4-3
RefSeq ID: NR_135113
Location (hg38): chr1:156614742-156621928
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 385 bp
Exons: 2
Sources: Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_135113.1
Alternative gene names: LOC101928177


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -166.8075 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPATCH4-3:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
5.0 lnc-PAQR6-15:1
5.1 lnc-PAQR6-15:1
5.2 lnc-GPATCH4-3:3