Transcript: lnc-GPBP1-1:1

Basic information

LNCipedia transcript ID: lnc-GPBP1-1:1 ?
LNCipedia gene ID: lnc-GPBP1-1
Location (hg19): chr5:56690887-56829251
Strand: +
Class: antisense
Transcript size: 897 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016
Alternative transcript names: ENST00000506106.1; CTD-2023N9.1-001; OTTHUMT00000369242.1; NONHSAT101576
Alternative gene names: ENSG00000250961.1; CTD-2023N9.1; OTTHUMG00000162323.2


RNA sequence:

Structure:

Protein coding potential


Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -68.2025 non-coding ?
CPAT coding probability 0.44% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-1:1 yes no

Secondary structure information

RNAfold image: download
Randfold minimum free energy:
Randfold P-value:

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Goedert (2016), RMEL3, a novel BRAFV600E-associated long noncoding RNA, is required for MAPK and PI3K signaling in melanoma., Oncotarget


LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
4.0 lnc-GPBP1-1:1
3.1 lnc-GPBP1-1:1