Transcript: lnc-GPBP1-1:2

Basic information

LNCipedia transcript ID: lnc-GPBP1-1:2 ?
LNCipedia gene ID: lnc-GPBP1-1
Location (hg19): chr5:56784739-56792830
Strand: +
Class: intergenic
Transcript size: 394 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT101579; FPKM1_group_25405_transcript_1
Alternative gene names:

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding ?
Lee translation initiation sites 0 non-coding ?
Highest peak:0
PhyloCSF score -93.7257 non-coding ?
CPAT coding probability 0.27% non-coding ?
Bazzini small ORFs 0 non-coding ?
In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-1:2 no no

Secondary structure information

RNAfold image: download
Randfold minimum free energy:
Randfold P-value:

Targetting miRNAs

No microRNA targets found with MirTarget2

Available literature

  1. Goedert (2016), RMEL3, a novel BRAFV600E-associated long noncoding RNA, is required for MAPK and PI3K signaling in melanoma., Oncotarget

LNCipedia transcript ID history

LNCipedia version Deprecated transcript ID
3.1 lnc-GPBP1-1:2
4.0 lnc-GPBP1-1:2