Transcript: lnc-GPBP1-2:3

Basic information

LNCipedia transcript ID: lnc-GPBP1-2:3 
LNCipedia gene ID: lnc-GPBP1-2
Ensembl Gene ID: ENSG00000249436
Ensembl Transcript ID: ENST00000509844
Location (hg38): chr5:57614389-57617431
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 820 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00009406; ENST00000509844; ENST00000509844.1; CTD-2023N9.3-001; OTTHUMT00000369241.1
Alternative gene names: XLOC_004397; linc-GAPT-2; ENSG00000249436; CTD-2023N9.3; ENSG00000249436.1; OTTHUMG00000162504.1; AC008780.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -209.2268 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPBP1-1:3
3.1 lnc-GPBP1-2:3
4.0 lnc-GPBP1-2:3
4.1 lnc-GPBP1-2:3
5.0 lnc-GPBP1-2:3
5.1 lnc-GPBP1-13:7
5.2 lnc-GPBP1-2:3