Transcript: lnc-GPBP1-3:12

Basic information

LNCipedia transcript ID: lnc-GPBP1-3:12 
LNCipedia gene ID: lnc-GPBP1-3
Location (hg38): chr5:57650659-57682938
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4423 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000075950.1|ENCT00000344602.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 10.6249 non-coding 
CPAT coding probability 1.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPBP1-3:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-GPBP1-3:12
5.0 lnc-GPBP1-3:12
5.1 lnc-GPBP1-16:6
5.2 lnc-GPBP1-3:12