Transcript: lnc-GPC1-1:1

Basic information

LNCipedia transcript ID: lnc-GPC1-1:1 
LNCipedia gene ID: lnc-GPC1-1
Ensembl Gene ID: ENSG00000259889
Ensembl Transcript ID: ENST00000567853
Location (hg38): chr2:239734956-239735538
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 583 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000567853.1; RP11-315F22.1-001; OTTHUMT00000431741.1; NONHSAT077804
Alternative gene names: ENSG00000259889.1; RP11-315F22.1; OTTHUMG00000176304.1; AC093802.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 27.9865 non-coding 
CPAT coding probability 5.17% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPC1-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC093802.1.1-1:1
4.0 lnc-AC093802.1.1-1:1
4.1 lnc-AC093802.1.1-1:1
5.0 lnc-AC093802.1.1-1:1
5.1 lnc-SNED1-24:1
5.2 lnc-GPC1-1:1