Transcript: lnc-GPC1-2:2

Basic information

LNCipedia transcript ID: lnc-GPC1-2:2 
LNCipedia gene ID: lnc-GPC1-2
Ensembl Gene ID: ENSG00000220256
Ensembl Transcript ID: ENST00000407524
Location (hg38): chr2:239762860-239802883
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3238 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000407524.1
Alternative gene names: ENSG00000220256.3; AC093802.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 0.9523 non-coding 
CPAT coding probability 19.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPC1-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC093802.1.1-2:2
4.1 lnc-AC093802.1.1-2:2
5.0 lnc-AC093802.1.1-2:2
5.1 lnc-SNED1-23:2
5.2 lnc-GPC1-2:2