Transcript: lnc-GPCPD1-8:4

Basic information

LNCipedia transcript ID: lnc-GPCPD1-8:4 
LNCipedia gene ID: lnc-GPCPD1-8
Location (hg38): chr20:5495243-5510155
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 6901 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028607; NONHSAT078362
Alternative gene names: XLOC_013643; linc-PROKR2-4;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 35.0125 non-coding 
CPAT coding probability 8.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPCPD1-8:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPCPD1-1:2
3.1 lnc-GPCPD1-1:2
4.0 LINC00654:4
4.1 LINC00654:4
5.0 LINC00654:4
5.1 lnc-RNF24-46:4
5.2 lnc-GPCPD1-8:4