Transcript: lnc-GPER1-2:4

Basic information

LNCipedia transcript ID: lnc-GPER1-2:4 
LNCipedia gene ID: lnc-GPER1-2
Ensembl Gene ID: ENSG00000224079
Ensembl Transcript ID: ENST00000449721
Location (hg38): chr7:1074450-1078036
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 869 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000449721.1; AC091729.7-001; OTTHUMT00000322842.1; NONHSAT118691
Alternative gene names: ENSG00000224079.1; AC091729.7; OTTHUMG00000151481.1; AC091729.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 38.3803 non-coding 
CPAT coding probability 3.84% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPER1-2:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPER-2:1
4.0 lnc-GPER-2:1
4.1 lnc-GPER-2:1
5.0 lnc-GPER-2:1
5.1 lnc-GPER1-2:2
5.2 lnc-GPER1-2:4