Transcript: lnc-GPHB5-1:2

Basic information

LNCipedia transcript ID: lnc-GPHB5-1:2 
LNCipedia gene ID: lnc-GPHB5-1
Location (hg38): chr14:63312928-63317849
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 390 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000314140; ENST00000314140.1; GPHB5-201
Alternative gene names: ENSG00000179600; GPHB5; ENSG00000179600.2; OTTHUMG00000168678.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1591.9133 coding 
CPAT coding probability 84.80% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPHB5-1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PPP2R5E-1:2
3.1 lnc-PPP2R5E-1:2
4.0 lnc-PPP2R5E-1:2
4.1 lnc-PPP2R5E-1:2
5.0 lnc-PPP2R5E-1:2
5.1 lnc-DHRS7-31:2
5.2 lnc-GPHB5-1:2