Transcript: lnc-GPM6B-1:3

Basic information

LNCipedia transcript ID: lnc-GPM6B-1:3 
LNCipedia gene ID: lnc-GPM6B-1
Ensembl Gene ID: ENSG00000212663
Ensembl Transcript ID: ENST00000391359
Location (hg38): chrX:13980066-13988820
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 544 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017042; ENST00000391359; ENST00000391359.2; RP1-122K4.3-001; OTTHUMT00000055825.1; NONHSAT136325
Alternative gene names: XLOC_008117; linc-GPM6B; ENSG00000212663; RP1-122K4.3; ENSG00000212663.2; OTTHUMG00000021163.1; AC003035.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -262.174 non-coding 
CPAT coding probability 0.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPM6B-1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GEMIN8-1:2
3.1 lnc-GEMIN8-1:2
4.0 lnc-GPM6B-1:3
4.1 lnc-GPM6B-1:3
5.0 lnc-GPM6B-1:3
5.1 lnc-PCSK1N-198:2
5.2 lnc-GPM6B-1:3