Transcript: lnc-GPR149-2:1

Basic information

LNCipedia transcript ID: lnc-GPR149-2:1 
LNCipedia gene ID: lnc-GPR149-2
Ensembl Gene ID: ENSG00000243969
Ensembl Transcript ID: ENST00000478814
Location (hg38): chr3:154827016-154861017
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 351 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005854; ENST00000478814; ENST00000478814.1; RP11-439C8.1-001; OTTHUMT00000353426.1; NONHSAT092815
Alternative gene names: XLOC_003297; linc-GPR149-4; ENSG00000243969; RP11-439C8.1; ENSG00000243969.1; OTTHUMG00000159127.1; AC073359.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -253.3896 non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR149-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR149-2:1
3.1 lnc-GPR149-2:1
4.0 lnc-GPR149-2:1
4.1 lnc-GPR149-2:1
5.0 lnc-GPR149-2:1
5.1 lnc-SHOX2-43:1
5.2 lnc-GPR149-2:1