Transcript: lnc-GPR183-47:14

Basic information

LNCipedia transcript ID: lnc-GPR183-47:14 
HGNC Gene Symbol: lnc-GPR183-47    
HGNC Full Gene Name: long intergenic non-protein coding RNA 449
Ensembl Gene ID: ENSG00000203441
Ensembl Transcript ID: ENST00000366259
Location (hg38): chr13:99499727-99501052
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 872 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021693; ENST00000366259.2; LINC00449-005; OTTHUMT00000045600.1; NONHSAT034925
Alternative gene names: XLOC_010707; linc-GPR183-3; ENSG00000203441.2; LINC00449; OTTHUMG00000017270.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 18.2454 non-coding 
CPAT coding probability 11.26% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR183-47:14 yes no no no

Available literature

  1. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  2. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR183-2:2
3.1 lnc-GPR183-3:2
4.0 LINC00449:2
4.1 LINC00449:2
5.0 LINC00449:2
5.1 lnc-IRS2-47:14
5.2 lnc-GPR183-47:14