Transcript: lnc-GPR183-47:2

Basic information

LNCipedia transcript ID: lnc-GPR183-47:2 
LNCipedia gene ID: lnc-GPR183-47
Location (hg38): chr13:99490459-99501747
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 10175 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000203441.2|HBMT00000396671.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.2454 non-coding 
CPAT coding probability 13.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR183-47:2 yes no no no

Available literature

  1. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  2. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 LINC00449:13
5.0 LINC00449:13
5.1 lnc-IRS2-47:2
5.2 lnc-GPR183-47:2