Transcript: lnc-GPR183-47:20

Basic information

LNCipedia transcript ID: lnc-GPR183-47:20 
HGNC Gene Symbol: lnc-GPR183-47    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1232
Ensembl Gene ID: ENSG00000280734
Ensembl Transcript ID: ENST00000630421
Location (hg38): chr13:99486962-99496772
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1002 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; NONCODE v4; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000441924; TCONS_00021692; NONHSAT034919; ENST00000630421.2
Alternative gene names: ENSG00000233552; XLOC_010706; linc-GPR183-2; AL139035.1; ENSG00000280734.2; LINC01232;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.5308 non-coding 
CPAT coding probability 3.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR183-47:20 yes no no no

Available literature

  1. Tong (2015), Identification of the long non-coding RNA POU3F3 in plasma as a novel biomarker for diagnosis of esophageal squamous cell carcinoma., Mol. Cancer
  2. Li (2014), LncRNA profile study reveals a three-lncRNA signature associated with the survival of patients with oesophageal squamous cell carcinoma., Gut


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR183-1:2
3.1 lnc-GPR183-2:2
4.0 LINC00449:7
4.1 LINC00449:7
5.0 LINC00449:7
5.1 lnc-IRS2-47:20
5.2 lnc-GPR183-47:20