Transcript: lnc-GPR26-2:1

Basic information

LNCipedia transcript ID: lnc-GPR26-2:1 
LNCipedia gene ID: lnc-GPR26-2
Ensembl Gene ID: ENSG00000234542
Ensembl Transcript ID: ENST00000451295
Location (hg38): chr10:123574227-123583767
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 438 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017885; ENST00000451295; ENST00000451295.1; RP11-282I1.2-001; OTTHUMT00000050849.1; NONHSAT016790
Alternative gene names: XLOC_008654; linc-GPR26-1; ENSG00000234542; RP11-282I1.2; ENSG00000234542.1; OTTHUMG00000019203.1; AL357127.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -121.9298 non-coding 
CPAT coding probability 4.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GPR26-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPR26-1:1
3.1 lnc-GPR26-2:1
4.0 lnc-GPR26-2:1
4.1 lnc-GPR26-2:1
5.0 lnc-GPR26-2:1
5.1 lnc-EDRF1-28:1
5.2 lnc-GPR26-2:1