Transcript: lnc-GPX5-2:1

Basic information

LNCipedia transcript ID: lnc-GPX5-2:1 
LNCipedia gene ID: lnc-GPX5-2
Location (hg38): chr6:28613128-28629997
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3909 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00011763; NONHSAT108474
Alternative gene names: XLOC_005224; linc-LOC100129636-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 54.0642 non-coding 
CPAT coding probability 57.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GPX5-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GPX5-2:1
3.1 lnc-GPX5-2:1
4.0 lnc-GPX5-2:1
4.1 lnc-GPX5-2:1
5.0 lnc-GPX5-2:1
5.1 lnc-OR2I1P-44:1
5.2 lnc-GPX5-2:1