Transcript: lnc-GRAMD1B-7:1

Basic information

LNCipedia transcript ID: lnc-GRAMD1B-7:1 
LNCipedia gene ID: lnc-GRAMD1B-7
Ensembl Gene ID: ENSG00000254710
Ensembl Transcript ID: ENST00000531681
Location (hg38): chr11:123188802-123228277
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 701 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531681.1; CTD-2216M2.1-001; OTTHUMT00000387548.1; NONHSAT024841
Alternative gene names: ENSG00000254710.1; CTD-2216M2.1; OTTHUMG00000166033.1; AP001970.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -88.1123 non-coding 
CPAT coding probability 8.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAMD1B-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AP000783.1.1-2:1
4.0 lnc-AP000783.1.1-2:1
4.1 lnc-AP000783.1.1-2:1
5.0 lnc-AP000783.1.1-2:1
5.1 lnc-HINFP-51:1
5.2 lnc-GRAMD1B-7:1