Transcript: lnc-GRAP-3:1

Basic information

LNCipedia transcript ID: lnc-GRAP-3:1 
LNCipedia gene ID: lnc-GRAP-3
Ensembl Gene ID: ENSG00000262202
Ensembl Transcript ID: ENST00000573866
Location (hg38): chr17:19112000-19112636
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 637 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573866.2; RP11-160E2.6-001; OTTHUMT00000440781.2; NONHSAT146431
Alternative gene names: ENSG00000262202.2; RP11-160E2.6; OTTHUMG00000178158.2; ENSG00000262202.3; SNORD3D; ENSG00000262202.4; AC007952.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 22.5128 non-coding 
CPAT coding probability 4.85% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAP-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007952.2-2:1
4.0 lnc-AC007952.2-2:1
4.1 lnc-AC007952.2-2:1
5.0 lnc-AC007952.2-2:1
5.1 lnc-B9D1-12:1
5.2 lnc-GRAP-3:1