Transcript: lnc-GRAP-4:1

Basic information

LNCipedia transcript ID: lnc-GRAP-4:1 
LNCipedia gene ID: lnc-GRAP-4
Ensembl Gene ID: ENSG00000262319
Ensembl Transcript ID: ENST00000573168
Location (hg38): chr17:19141017-19143689
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2673 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000573168.1; CTC-457L16.2-001; OTTHUMT00000440786.1; NONHSAT146434
Alternative gene names: ENSG00000262319.1; CTC-457L16.2; OTTHUMG00000178159.1; AC007952.6


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.6351 non-coding 
CPAT coding probability 31.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAP-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007952.2-1:1
4.0 lnc-AC007952.2-1:1
4.1 lnc-AC007952.2-1:1
5.0 lnc-AC007952.2-1:1
5.1 lnc-B9D1-11:1
5.2 lnc-GRAP-4:1