Transcript: lnc-GRAP-6:2

Basic information

LNCipedia transcript ID: lnc-GRAP-6:2 
LNCipedia gene ID: lnc-GRAP-6
Ensembl Gene ID: ENSG00000266311
Ensembl Transcript ID: ENST00000460772
Location (hg38): chr17:19164209-19174428
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 428 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000460772.2; AC007952.4-003; OTTHUMT00000132156.2; NONHSAT146437; ENST00000460772.6
Alternative gene names: ENSG00000266311.1; AC007952.4; OTTHUMG00000178492.1; ENSG00000266311.2; ENSG00000266311.6; AC007952.8


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -51.3431 non-coding 
CPAT coding probability 42.69% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GRAP-6:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007952.6.1-1:2
4.0 lnc-AC007952.2.1-1:4
4.1 lnc-AC007952.2.1-1:4
5.0 lnc-AC007952.2.1-1:4
5.1 lnc-B9D1-9:2
5.2 lnc-GRAP-6:2