Transcript: lnc-GRAPL-1:1

Basic information

LNCipedia transcript ID: lnc-GRAPL-1:1 
LNCipedia gene ID: lnc-GRAPL-1
Ensembl Gene ID: ENSG00000262292
Ensembl Transcript ID: ENST00000572818
Location (hg38): chr17:19160789-19162274
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1486 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000572818.2; RP11-160E2.11-001; OTTHUMT00000440792.2; NONHSAT146436
Alternative gene names: ENSG00000262292.2; RP11-160E2.11; OTTHUMG00000178165.2; AC007952.5


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.5115 non-coding 
CPAT coding probability 5.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAPL-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007952.1-1:1
4.0 lnc-AC007952.1-1:1
4.1 lnc-AC007952.1-1:1
5.0 lnc-AC007952.1-1:1
5.1 lnc-GLP2R-148:1
5.2 lnc-GRAPL-1:1