Transcript: lnc-GRAPL-5:3

Basic information

LNCipedia transcript ID: lnc-GRAPL-5:3 
LNCipedia gene ID: lnc-GRAPL-5
Ensembl Gene ID: ENSG00000230197
Ensembl Transcript ID: ENST00000439868
Location (hg38): chr17:19079988-19080629
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 392 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000439868.1; RP11-160E2.17-003; OTTHUMT00000441119.1; NONHSAT146427
Alternative gene names: ENSG00000230197.2; RP11-160E2.17; OTTHUMG00000178239.1; ENSG00000230197.6; AC007952.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.0378 non-coding 
CPAT coding probability 2.66% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRAPL-5:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC007952.5.1-1:3
4.0 lnc-AC007952.1.1-1:5
4.1 lnc-AC007952.1.1-1:5
5.0 lnc-AC007952.1.1-1:5
5.1 lnc-GLP2R-146:3
5.2 lnc-GRAPL-5:3