Transcript: lnc-GREM2-3:1

Basic information

LNCipedia transcript ID: lnc-GREM2-3:1 
LNCipedia gene ID: lnc-GREM2-3
Ensembl Gene ID: ENSG00000233735
Ensembl Transcript ID: ENST00000444308
Location (hg38): chr1:240177839-240179644
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 338 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000444308.1; RP11-567G24.3-002; OTTHUMT00000096221.1; NONHSAT010493
Alternative gene names: ENSG00000233735.1; RP11-567G24.3; OTTHUMG00000039886.1; ENSG00000233735.5; AL359918.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -12.5186 non-coding 
CPAT coding probability 0.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GREM2-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GREM2-3:1
4.0 lnc-GREM2-3:1
4.1 lnc-GREM2-3:1
5.0 lnc-GREM2-3:1
5.1 lnc-GREM2-3:1
5.2 lnc-GREM2-3:1