Transcript: lnc-GRHL2-7:1

Basic information

LNCipedia transcript ID: lnc-GRHL2-7:1 
LNCipedia gene ID: lnc-GRHL2-7
Ensembl Gene ID: ENSG00000253355
Ensembl Transcript ID: ENST00000520411
Location (hg38): chr8:101128987-101133245
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000520411; ENST00000520411.1; KB-1460A1.2-002; OTTHUMT00000380467.1; NONHSAT128034
Alternative gene names: ENSG00000253355; KB-1460A1.2; ENSG00000253355.1; OTTHUMG00000164821.1; AP003469.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -177.3129 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRHL2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRHL2-6:1
3.1 lnc-GRHL2-7:1
4.0 lnc-GRHL2-7:1
4.1 lnc-GRHL2-7:1
5.0 lnc-GRHL2-7:1
5.1 lnc-CA2-173:2
5.2 lnc-GRHL2-7:1