Transcript: lnc-GRHL2-8:1

Basic information

LNCipedia transcript ID: lnc-GRHL2-8:1 
LNCipedia gene ID: lnc-GRHL2-8
Ensembl Gene ID: ENSG00000248599
Ensembl Transcript ID: ENST00000514926
RefSeq ID: NR_033962
Location (hg38): chr8:101052054-101076251
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1948 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00014467; ENST00000514926; ENST00000514926.1; RP11-302J23.1-001; OTTHUMT00000380249.1; NONHSAT128030; NR_033962; NR_033962.1
Alternative gene names: XLOC_006885; linc-GRHL2-5; ENSG00000248599; RP11-302J23.1; ENSG00000248599.1; OTTHUMG00000164780.1; FLJ42969; AC018781.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -82.8927 non-coding 
CPAT coding probability 14.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRHL2-8:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRHL2-7:1
3.1 lnc-GRHL2-8:1
4.0 lnc-GRHL2-8:1
4.1 lnc-GRHL2-8:1
5.0 lnc-GRHL2-8:1
5.1 lnc-CA2-171:5
5.2 lnc-GRHL2-8:1