Transcript: lnc-GRIK2-2:1

Basic information

LNCipedia transcript ID: lnc-GRIK2-2:1 
LNCipedia gene ID: lnc-GRIK2-2
Location (hg38): chr6:100881471-100882971
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1501 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000565695.1; RP3-467N11.1-001; OTTHUMT00000431289.1
Alternative gene names: ENSG00000260000.1; RP3-467N11.1; OTTHUMG00000175935.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.6921 non-coding 
CPAT coding probability 0.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRIK2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRIK2-2:1
4.0 lnc-GRIK2-2:1
4.1 lnc-GRIK2-2:1
5.0 lnc-GRIK2-2:1
5.1 lnc-SMPD2-80:7
5.2 lnc-GRIK2-2:1