Transcript: lnc-GRIK2-2:11

Basic information

LNCipedia transcript ID: lnc-GRIK2-2:11 
LNCipedia gene ID: lnc-GRIK2-2
Location (hg38): chr6:100884772-100898988
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3625 bp
Exons: 3
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT114163; FPKM1_group_28099_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.3233 non-coding 
CPAT coding probability 32.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRIK2-2:11 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GRIK2-5:1
4.0 lnc-GRIK2-5:1
4.1 lnc-GRIK2-2:11
5.0 lnc-GRIK2-2:11
5.1 lnc-SMPD2-80:11
5.2 lnc-GRIK2-2:11