Transcript: lnc-GRIN2A-5:1

Basic information

LNCipedia transcript ID: lnc-GRIN2A-5:1 
LNCipedia gene ID: lnc-GRIN2A-5
Ensembl Gene ID: ENSG00000260362
Ensembl Transcript ID: ENST00000561538
Location (hg38): chr16:9666885-9676843
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 660 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000561538.1
Alternative gene names: ENSG00000260362.1; RP11-297M9.1; AC007218.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 13.0553 non-coding 
CPAT coding probability 3.81% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRIN2A-5:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-RP11-297M9.1.1-5:1
4.1 lnc-RP11-297M9.1.1-5:1
5.0 lnc-RP11-297M9.1.1-5:1
5.1 lnc-PARN-88:1
5.2 lnc-GRIN2A-5:1