Transcript: lnc-GRIP1-2:3

Basic information

LNCipedia transcript ID: lnc-GRIP1-2:3 
LNCipedia gene ID: lnc-GRIP1-2
Ensembl Gene ID: ENSG00000257083
Ensembl Transcript ID: ENST00000538008
RefSeq ID: NR_120490
Location (hg38): chr12:67077626-67096284
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 508 bp
Exons: 4
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000538008; ENST00000538008.1; RP11-123O10.3-002; OTTHUMT00000402073.1; NONHSAT029238; NR_120490; ENST00000538008.5; NR_120490.1
Alternative gene names: ENSG00000257083; RP11-123O10.3; ENSG00000257083.1; OTTHUMG00000169070.1; ENSG00000257083.5; AC073530.1; LOC102724421


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -163.7221 non-coding 
CPAT coding probability 3.67% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRIP1-2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRIP1-2:3
3.1 lnc-GRIP1-2:3
4.0 lnc-GRIP1-2:3
4.1 lnc-GRIP1-2:3
5.0 lnc-GRIP1-2:3
5.1 lnc-GRIP1-2:3
5.2 lnc-GRIP1-2:3