Transcript: lnc-GRM3-2:1

Basic information

LNCipedia transcript ID: lnc-GRM3-2:1 
LNCipedia gene ID: lnc-GRM3-2
Ensembl Gene ID: ENSG00000235139
Ensembl Transcript ID: ENST00000450977
RefSeq ID: NR_110079
Location (hg38): chr7:84532476-84574843
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 4104 bp
Exons: 3
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: TCONS_00012885; ENST00000450977; ENST00000450977.2; AC003984.1-001; OTTHUMT00000336286.3; NONHSAT121789; NR_110079; NR_110079.1
Alternative gene names: XLOC_006159; linc-GRM3-2; ENSG00000235139; AC003984.1; ENSG00000235139.2; OTTHUMG00000154603.3; LOC101927378


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -49.5154 non-coding 
CPAT coding probability 0.58% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GRM3-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GRM3-2:1
3.1 lnc-GRM3-2:1
4.0 lnc-GRM3-2:1
4.1 lnc-GRM3-2:1
5.0 lnc-GRM3-2:1
5.1 lnc-FKBP6-135:1
5.2 lnc-GRM3-2:1