Transcript: lnc-GSDMC-34:4

Basic information

LNCipedia transcript ID: lnc-GSDMC-34:4 
LNCipedia gene ID: lnc-GSDMC-34
Location (hg38): chr8:129351692-129680239
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1720 bp
Exons: 4
Sources: Broad Institute
Alternative transcript names: TCONS_00014564
Alternative gene names: XLOC_007221; linc-FAM84B-1; MGC27434; RAM


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.5873 non-coding 
CPAT coding probability 32.08% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GSDMC-34:4 no no no no

Available literature

  1. Ellinger (2015), The long non-coding RNA lnc-ZNF180-2 is a prognostic biomarker in patients with clear cell renal cell carcinoma., Am J Cancer Res
  2. Hirano (2015), Long noncoding RNA, CCDC26, controls myeloid leukemia cell growth through regulation of KIT expression., Mol. Cancer
  3. Li (2015), Construction and analysis of lncRNA-lncRNA synergistic networks to reveal clinically relevant lncRNAs in cancer., Oncotarget
  4. Chinen (2014), 8q24 amplified segments involve novel fusion genes between NSMCE2 and long noncoding RNAs in acute myelogenous leukemia., J Hematol Oncol
  5. Dryden (2014), Unbiased analysis of potential targets of breast cancer susceptibility loci by Capture Hi-C., Genome Res.
  6. Tseng (2014), PVT1 dependence in cancer with MYC copy-number increase., Nature
  7. Enciso-Mora (2013), Deciphering the 8q24.21 association for glioma., Hum. Mol. Genet.
  8. Jin (2011), Human polymorphisms at long non-coding RNAs (lncRNAs) and association with prostate cancer risk., Carcinogenesis
  9. Yin (2006), Co-resistance to retinoic acid and TRAIL by insertion mutagenesis into RAM., Oncogene


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GSDMC-1:2
3.1 lnc-GSDMC-1:3
4.0 CCDC26:2
4.1 CCDC26:2
5.0 CCDC26:2
5.1 lnc-FAM84B-34:4
5.2 lnc-GSDMC-34:4