Transcript: lnc-GSDMD-4:1

Basic information

LNCipedia transcript ID: lnc-GSDMD-4:1 
LNCipedia gene ID: lnc-GSDMD-4
Location (hg38): chr8:143500982-143501396
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 415 bp
Exons: 1
Sources: Nielsen et al.,2014
Alternative transcript names: predAs_ge08_MAFA_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.0237 non-coding 
CPAT coding probability 3.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GSDMD-4:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GSDMD-4:1
4.0 lnc-GSDMD-4:1
4.1 lnc-GSDMD-4:1
5.0 lnc-GSDMD-4:1
5.1 lnc-GPT-44:1
5.2 lnc-GSDMD-4:1