Transcript: lnc-GSG1L2-3:2

Basic information

LNCipedia transcript ID: lnc-GSG1L2-3:2 
LNCipedia gene ID: lnc-GSG1L2-3
Ensembl Gene ID: ENSG00000278944
Ensembl Transcript ID: ENST00000609065
Location (hg38): chr17:9791227-9808855
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 202 bp
Exons: 3
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609065.1
Alternative gene names: ENSG00000278944.1; RP11-477N12.4; AC027045.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 313.2792 coding 
CPAT coding probability 3.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-GSG1L2-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-AC027045.1-3:1
4.1 lnc-AC027045.1-3:1
5.0 lnc-AC027045.1-3:1
5.1 lnc-GSG1L2-3:1
5.2 lnc-GSG1L2-3:2