Transcript: lnc-GTF2A1-78:1

Basic information

LNCipedia transcript ID: lnc-GTF2A1-78:1 
LNCipedia gene ID: lnc-GTF2A1-78
Location (hg38): chr14:81107033-81170414
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 601 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: ENST00000557775.1; RP11-114N19.3-001; OTTHUMT00000413374.1; NONHSAT038048
Alternative gene names: ENSG00000258999.1; RP11-114N19.3; OTTHUMG00000171432.1; AL136040.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.853 non-coding 
CPAT coding probability 3.97% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2A1-78:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2A1-1:1
4.0 lnc-GTF2A1-1:1
4.1 lnc-GTF2A1-1:1
5.0 lnc-GTF2A1-1:1
5.1 lnc-PROX2-78:1
5.2 lnc-GTF2A1-78:1