Transcript: lnc-GTF2A2-2:1

Basic information

LNCipedia transcript ID: lnc-GTF2A2-2:1 
LNCipedia gene ID: lnc-GTF2A2-2
Ensembl Gene ID: ENSG00000259735
Ensembl Transcript ID: ENST00000558749
Location (hg38): chr15:59348648-59359889
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 497 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558749.1; RP11-356M20.3-001; OTTHUMT00000416035.1; NONHSAT044164
Alternative gene names: ENSG00000259735.1; RP11-356M20.3; OTTHUMG00000171946.1; AC092868.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -38.7132 non-coding 
CPAT coding probability 1.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2A2-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2A2-2:1
4.0 lnc-GTF2A2-2:1
4.1 lnc-GTF2A2-2:1
5.0 lnc-GTF2A2-2:1
5.1 lnc-ICE2-20:1
5.2 lnc-GTF2A2-2:1