Transcript: lnc-GTF2B-15:3

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:3 
LNCipedia gene ID: lnc-GTF2B-15
Location (hg38): chr1:88540303-88684952
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 850 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000425750; ENST00000425750.1; RP11-76N22.2-002; OTTHUMT00000027734.1; NONHSAT004327
Alternative gene names: ENSG00000237505; RP11-76N22.2; ENSG00000237505.1; OTTHUMG00000010024.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -309.2004 non-coding 
CPAT coding probability 7.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2B-1:2
3.1 lnc-GTF2B-1:2
4.0 PKN2-AS1:3
4.1 PKN2-AS1:3
5.0 PKN2-AS1:3
5.1 lnc-RBMXL1-15:3
5.2 lnc-GTF2B-15:3