Transcript: lnc-GTF2B-15:6

Basic information

LNCipedia transcript ID: lnc-GTF2B-15:6 
HGNC Gene Symbol: lnc-GTF2B-15    
HGNC Full Gene Name: PKN2 antisense RNA 1
Ensembl Gene ID: ENSG00000237505
Ensembl Transcript ID: ENST00000425750
Location (hg38): chr1:88540303-88570860
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 762 bp
Exons: 4
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425750.2
Alternative gene names: ENSG00000237505.2; RP11-76N22.2; ENSG00000237505.6; PKN2-AS1; ; ENSG00000237505.7


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -309.2004 non-coding 
CPAT coding probability 7.34% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2B-15:6 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2B-1:4
4.0 PKN2-AS1:5
4.1 PKN2-AS1:5
5.0 PKN2-AS1:5
5.1 lnc-RBMXL1-15:6
5.2 lnc-GTF2B-15:6