Transcript: lnc-GTF2F2-1:1

Basic information

LNCipedia transcript ID: lnc-GTF2F2-1:1 
LNCipedia gene ID: lnc-GTF2F2-1
Ensembl Gene ID: ENSG00000228886
Ensembl Transcript ID: ENST00000420693
Location (hg38): chr13:45350323-45351350
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 310 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00021547; ENST00000420693; ENST00000420693.1; RP11-290D2.3-001; OTTHUMT00000044764.1; NONHSAT033581
Alternative gene names: XLOC_010378; linc-COG3-2; ENSG00000228886; RP11-290D2.3; ENSG00000228886.1; OTTHUMG00000016846.1; AL138963.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.1848 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2F2-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GTF2F2-1:1
3.1 lnc-GTF2F2-1:1
4.0 lnc-GTF2F2-1:1
4.1 lnc-GTF2F2-1:1
5.0 lnc-GTF2F2-1:1
5.1 lnc-KL-133:1
5.2 lnc-GTF2F2-1:1