Transcript: lnc-GTF2H5-3:3

Basic information

LNCipedia transcript ID: lnc-GTF2H5-3:3 
LNCipedia gene ID: lnc-GTF2H5-3
Ensembl Gene ID: ENSG00000274023
Ensembl Transcript ID: ENST00000619713
Location (hg38): chr6:158282841-158428379
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA
Transcript size: 561 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000619713.1
Alternative gene names: ENSG00000274023.1; RP11-732M18.4; AL360169.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -42.9161 non-coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2H5-3:3 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TULP4-3:1
4.1 lnc-TULP4-3:1
5.0 lnc-TULP4-3:1
5.1 lnc-GTF2H5-5:1
5.2 lnc-GTF2H5-3:3