Transcript: lnc-GTF2I-1:1

Basic information

LNCipedia transcript ID: lnc-GTF2I-1:1 
LNCipedia gene ID: lnc-GTF2I-1
Location (hg38): chr7:74633510-74633884
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 375 bp
Exons: 1
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000563339.1; RP5-1186P10.1-001; OTTHUMT00000422664.1; NONHSAT121467
Alternative gene names: ENSG00000261726.1; RP5-1186P10.1; OTTHUMG00000173280.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -790.1475 non-coding 
CPAT coding probability 7.13% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GTF2I-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GTF2I-1:1
4.0 lnc-GTF2I-1:1
4.1 lnc-GTF2I-1:1
5.0 lnc-GTF2I-1:1
5.1 lnc-FKBP6-36:2
5.2 lnc-GTF2I-1:1