Transcript: lnc-GUCY1A1-2:1

Basic information

LNCipedia transcript ID: lnc-GUCY1A1-2:1 
LNCipedia gene ID: lnc-GUCY1A1-2
Ensembl Gene ID: ENSG00000251244
Ensembl Transcript ID: ENST00000508265
Location (hg38): chr4:155515727-155517459
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 519 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00007665; ENST00000508265; ENST00000508265.1; RP13-487K5.1-001; OTTHUMT00000366119.1; NONHSAT098928
Alternative gene names: XLOC_003750; linc-GUCY1A3-1; ENSG00000251244; RP13-487K5.1; ENSG00000251244.1; OTTHUMG00000161799.1; AC107208.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -83.5488 non-coding 
CPAT coding probability 1.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GUCY1A1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GUCY1A3-1:1
3.1 lnc-GUCY1A3-2:1
4.0 lnc-GUCY1A3-2:1
4.1 lnc-GUCY1A3-2:1
5.0 lnc-GUCY1A3-2:1
5.1 lnc-NPY2R-2:2
5.2 lnc-GUCY1A1-2:1