Transcript: lnc-GVQW2-1:5

Basic information

LNCipedia transcript ID: lnc-GVQW2-1:5 
LNCipedia gene ID: lnc-GVQW2-1
Location (hg38): chr6:138725211-138773652
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2685 bp
Exons: 4
Sources: Biogazelle lncRNA chip
Alternative transcript names: ENST00000500576
Alternative gene names: ENSG00000246133


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -59.6659 non-coding 
CPAT coding probability 4.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GVQW2-1:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-NHSL1-1:1
3.1 lnc-NHSL1-1:1
4.0 lnc-NHSL1-1:1
4.1 lnc-NHSL1-1:1
5.0 lnc-NHSL1-1:1
5.1 lnc-OLIG3-33:5
5.2 lnc-GVQW2-1:5