Transcript: lnc-GYPC-2:1

Basic information

LNCipedia transcript ID: lnc-GYPC-2:1 
LNCipedia gene ID: lnc-GYPC-2
Ensembl Gene ID: ENSG00000235774
Ensembl Transcript ID: ENST00000435352
Location (hg38): chr2:126308510-126343992
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 604 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000435352; ENST00000435352.1; AC023347.1-001; OTTHUMT00000330930.2; NONHSAT074127
Alternative gene names: ENSG00000235774; AC023347.1; ENSG00000235774.1; OTTHUMG00000153374.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -66.3265 non-coding 
CPAT coding probability 7.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GYPC-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GYPC-2:1
3.1 lnc-GYPC-2:1
4.0 lnc-GYPC-2:1
4.1 lnc-GYPC-2:1
5.0 lnc-GYPC-2:1
5.1 lnc-MYO7B-15:1
5.2 lnc-GYPC-2:1