Transcript: lnc-GYPC-2:2

Basic information

LNCipedia transcript ID: lnc-GYPC-2:2 
LNCipedia gene ID: lnc-GYPC-2
Ensembl Gene ID: ENSG00000235774
Ensembl Transcript ID: ENST00000419223
Location (hg38): chr2:126312414-126329132
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 440 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000419223; ENST00000419223.1; AC023347.1-002; OTTHUMT00000330931.1; NONHSAT074130
Alternative gene names: ENSG00000235774; AC023347.1; ENSG00000235774.1; OTTHUMG00000153374.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -137.4809 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-GYPC-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-GYPC-2:2
3.1 lnc-GYPC-2:2
4.0 lnc-GYPC-2:2
4.1 lnc-GYPC-2:2
5.0 lnc-GYPC-2:2
5.1 lnc-MYO7B-15:3
5.2 lnc-GYPC-2:2